uneven swelling is not neccesarily abnormal. but it can be bad enough for the wood to be considered "warped".
swelling itself wont warp the slate, but bolting down a slate over badly warped wood will.
if the swelling is not extreme and the wood is not deformed more than a milimeter or two, all should be fine once bolted down and leveled.
on the flip side of that, slate backing is cheap and easy to replace. why risk anything when you dont have to.