If you must know, my name is Vincent Bizon, I have been fooling around with cues since the 90's and started building cues over ten years ago. I am not here to sell cues so I don't promote my cue here on AZ. This is the reason I stay somewhat anonymous, but you don't have to be Sherlock to figure out who I am and that I build cues. I am also Machinist in a research shop as a full time profession so I am confident in saying I understand how parts should fit.
Now having said all that IMO the type of material chosen is directly related to the specifics of your joint. I never said wood joints don't work and are no good. I am simply saying that in close tolerance joint configuration such as in the case of the 3/8" pin with flat root. Wood may not be the best choice of material because of the fact that wood moves too much. Now having said that if Dave or whomever has devised a way of treating there threads to minimize movement so as to maintain a consistent fit through all the seasons then it is all good. It is however my deduction from what I have seen that you can't eliminate wood movement entirely and the only way to compensate for this movement is to have a large enough tolerance on your thread fit to allow for it. So it is only logical to choose a different material which is more stable if you wish to have a joint with a tight fit and I will qualify that statement with saying a clearance fit of +0.001" to a max of 0.002". The whole point of the flat rooted thread is that the minor dia of the pin pilots the joint in order to maintain concentricity, as well I believe you have a better feeling hit when the two surfaces are intimate. I think we have to remember when discussing this subject that one has to be specific in all the elements of the particular joint we are debating. One particular material may be better suited for a particular joint style then the next, for example Mcdermott uses a 3/8 ten joint into wood but they are not using the root dia as method of alignment so they have enough tolerance in their joint to allow for any movement.
Vincent...
I believe you to be correct in wood is going to move. All we can do are things that will minimize this as much as possible. If using a synthetic material as a plug is what you feel is the best way to accomplish this at the joint then so be it.
BUT...again I think you may be over thinking the whole assembly by worrying about a thou or even two thou difference in the minor/major of the pin and the pin hole in the shaft. Being as skilled as you are I'm sure you realize that a thou difference equates to .0005 on both side of the pin. A .002 thou size difference = .001 on both sides.
IMO......of this whole equation.....the most important is the two mating faces and how flat and relative they are to the center line of the cue.
A normal human will not be able to tell any difference at the outside of the joint between being absolute dead on center or being .001 off.
Of course we all strive to achieve the most precision we can with the tools we have and knowledge we use but I believe if using a flat faced joint you are going to be faced with this challenge no matter what material is used.
If you use a synthetic material such as phenolic the minor/major differences are going to have to be at least slightly different to be able to mate the two pieces anyway. Then as time moves on, wear may still have its effect.
IF it's so very important to the builder to have a very snug fit at least in maple you can have a "compression" fit on the major of the hole and the minor of the pin that may be the snug fit you're attempting to achieve. However, It's my belief that you can have it too snug and make it a struggle to lock the two mating faces together.
I don't care for a cue that I have to work at to mate the shaft with the butt.
I have found of all the methods I've tried in wooden threads I prefer a "slight" interference fit at the initial build and let the chips fall from there.
It's been my experience that due to any humidity changes where my cue is going to end up the difference is not going to be significant enough to have any effect on the way the cue will mate together by doing it this way.
There may be that oddball one or two over the course time but I haven't heard of or seen one of mine yet.
Maybe I've just been lucky.